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#ifndef PCL_REGISTRATION_TRANSFORMATION_ESTIMATION_DQ_HPP_
#define PCL_REGISTRATION_TRANSFORMATION_ESTIMATION_DQ_HPP_

#include <pcl/common/eigen.h>

///////////////////////////////////////////////////////////////////////////////////////////
template <typename PointSource, typename PointTarget, typename Scalar> inline void
pcl::registration::TransformationEstimationDualQuaternion<PointSource, PointTarget, Scalar>::estimateRigidTransformation (
    const pcl::PointCloud<PointSource> &cloud_src,
    const pcl::PointCloud<PointTarget> &cloud_tgt,
    Matrix4 &transformation_matrix) const
{
  size_t nr_points = cloud_src.points.size ();
  if (cloud_tgt.points.size () != nr_points)
  {
    PCL_ERROR ("[pcl::TransformationEstimationDualQuaternion::estimateRigidTransformation] Number or points in source (%lu) differs than target (%lu)!\n", nr_points, cloud_tgt.points.size ());
    return;
  }

  ConstCloudIterator<PointSource> source_it (cloud_src);
  ConstCloudIterator<PointTarget> target_it (cloud_tgt);
  estimateRigidTransformation (source_it, target_it, transformation_matrix);
}

///////////////////////////////////////////////////////////////////////////////////////////
template <typename PointSource, typename PointTarget, typename Scalar> void
pcl::registration::TransformationEstimationDualQuaternion<PointSource, PointTarget, Scalar>::estimateRigidTransformation (
    const pcl::PointCloud<PointSource> &cloud_src,
    const std::vector<int> &indices_src,
    const pcl::PointCloud<PointTarget> &cloud_tgt,
    Matrix4 &transformation_matrix) const
{
  if (indices_src.size () != cloud_tgt.points.size ())
  {
    PCL_ERROR ("[pcl::TransformationDQ::estimateRigidTransformation] Number or points in source (%lu) differs than target (%lu)!\n", indices_src.size (), cloud_tgt.points.size ());
    return;
  }

  ConstCloudIterator<PointSource> source_it (cloud_src, indices_src);
  ConstCloudIterator<PointTarget> target_it (cloud_tgt);
  estimateRigidTransformation (source_it, target_it, transformation_matrix);
}

///////////////////////////////////////////////////////////////////////////////////////////
template <typename PointSource, typename PointTarget, typename Scalar> inline void
pcl::registration::TransformationEstimationDualQuaternion<PointSource, PointTarget, Scalar>::estimateRigidTransformation (
    const pcl::PointCloud<PointSource> &cloud_src,
    const std::vector<int> &indices_src,
    const pcl::PointCloud<PointTarget> &cloud_tgt,
    const std::vector<int> &indices_tgt,
    Matrix4 &transformation_matrix) const
{
  if (indices_src.size () != indices_tgt.size ())
  {
    PCL_ERROR ("[pcl::TransformationEstimationDualQuaternion::estimateRigidTransformation] Number or points in source (%lu) differs than target (%lu)!\n", indices_src.size (), indices_tgt.size ());
    return;
  }

  ConstCloudIterator<PointSource> source_it (cloud_src, indices_src);
  ConstCloudIterator<PointTarget> target_it (cloud_tgt, indices_tgt);
  estimateRigidTransformation (source_it, target_it, transformation_matrix);
}

///////////////////////////////////////////////////////////////////////////////////////////
template <typename PointSource, typename PointTarget, typename Scalar> void
pcl::registration::TransformationEstimationDualQuaternion<PointSource, PointTarget, Scalar>::estimateRigidTransformation (
    const pcl::PointCloud<PointSource> &cloud_src,
    const pcl::PointCloud<PointTarget> &cloud_tgt,
    const pcl::Correspondences &correspondences,
    Matrix4 &transformation_matrix) const
{
  ConstCloudIterator<PointSource> source_it (cloud_src, correspondences, true);
  ConstCloudIterator<PointTarget> target_it (cloud_tgt, correspondences, false);
  estimateRigidTransformation (source_it, target_it, transformation_matrix);
}

///////////////////////////////////////////////////////////////////////////////////////////
template <typename PointSource, typename PointTarget, typename Scalar> inline void
pcl::registration::TransformationEstimationDualQuaternion<PointSource, PointTarget, Scalar>::estimateRigidTransformation (
    ConstCloudIterator<PointSource>& source_it,
    ConstCloudIterator<PointTarget>& target_it,
    Matrix4 &transformation_matrix) const
{
  const int npts = static_cast<int> (source_it.size ());

  transformation_matrix.setIdentity ();

  // dual quaternion optimization
  Eigen::Matrix<double, 4, 4> C1 = Eigen::Matrix<double, 4, 4>::Zero ();
  Eigen::Matrix<double, 4, 4> C2 = Eigen::Matrix<double, 4, 4>::Zero ();
  double* c1 = C1.data ();
  double* c2 = C2.data ();

  for (int i = 0; i < npts; ++i)
  {
    const PointSource& a = *source_it;
    const PointTarget& b = *target_it;
    const double axbx = a.x * b.x;
    const double ayby = a.y * b.y;
    const double azbz = a.z * b.z;
    const double axby = a.x * b.y;
    const double aybx = a.y * b.x;
    const double axbz = a.x * b.z;
    const double azbx = a.z * b.x;
    const double aybz = a.y * b.z;
    const double azby = a.z * b.y;
    c1[0]  += axbx - azbz - ayby;
    c1[5]  += ayby - azbz - axbx;
    c1[10] += azbz - axbx - ayby;
    c1[15] += axbx + ayby + azbz;
    c1[1]  += axby + aybx;
    c1[2]  += axbz + azbx;
    c1[3]  += aybz - azby;
    c1[6]  += azby + aybz;
    c1[7]  += azbx - axbz;
    c1[11] += axby - aybx;

    c2[1]  += a.z + b.z;
    c2[2]  -= a.y + b.y;
    c2[3]  += a.x - b.x;
    c2[6]  += a.x + b.x;
    c2[7]  += a.y - b.y;
    c2[11] += a.z - b.z;
    source_it++;
    target_it++;
  }

  c1[4]  = c1[1];
  c1[8]  = c1[2];
  c1[9]  = c1[6];
  c1[12] = c1[3];
  c1[13] = c1[7];
  c1[14] = c1[11];
  c2[4]  = -c2[1];
  c2[8]  = -c2[2];
  c2[12] = -c2[3];
  c2[9]  = -c2[6];
  c2[13] = -c2[7];
  c2[14] = -c2[11];

  C1 *= -2.0;
  C2 *= 2.0;

  const Eigen::Matrix<double, 4, 4> A = (0.25 / double (npts)) * C2.transpose () * C2 - C1;

  const Eigen::EigenSolver<Eigen::Matrix<double, 4, 4> > es (A);

  ptrdiff_t i;
  es.eigenvalues ().real ().maxCoeff (&i);
  const Eigen::Matrix<double, 4, 1> qmat = es.eigenvectors ().col (i).real ();
  const Eigen::Matrix<double, 4, 1> smat = - (0.5 / double (npts)) * C2 * qmat;

  const Eigen::Quaternion<double> q (qmat (3), qmat (0), qmat (1), qmat (2));
  const Eigen::Quaternion<double> s (smat (3), smat (0), smat (1), smat (2));

  const Eigen::Quaternion<double> t = s * q.conjugate ();

  const Eigen::Matrix<double, 3, 3> R (q.toRotationMatrix ());

  for (int i = 0; i < 3; ++i)
    for (int j = 0; j < 3; ++j)
      transformation_matrix (i, j) = R (i, j);

  transformation_matrix (0, 3) = - t.x ();
  transformation_matrix (1, 3) = - t.y ();
  transformation_matrix (2, 3) = - t.z ();
}

#endif /* PCL_REGISTRATION_TRANSFORMATION_ESTIMATION_DQ_HPP_ */
